PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.AR1XP
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family GATA
Protein Properties Length: 249aa    MW: 27663.5 Da    PI: 8.1334
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.AR1XPgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.62.3e-20130164135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++
  Araip.AR1XP 130 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 164
                  ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-18124179IPR000679Zinc finger, GATA-type
PROSITE profilePS5011413.89124160IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.5E-14127166No hitNo description
Gene3DG3DSA:3.30.50.103.4E-17128164IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.14E-13129161No hitNo description
PfamPF003205.7E-18130164IPR000679Zinc finger, GATA-type
PROSITE patternPS003440130155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MMHHRCCSGT THQGHVMGPC TCAMFHGQTT TNSFSMLFSM PNHHNNPYDQ PDDIIYSSSS  60
SSSVDCTLSL GTPSTRFTED EEKRTRHERR SSVSNFCWDL LQSTKHNHSQ TKSSSNRPSN  120
NADPLLARRC ANCDTTSTPL WRNGPRGPKS LCNACGIRFK KEERRASAAA ATTAAASGGV  180
MDSSQMYSHH NSNSWYAHSQ SQKMAAAAMG SEFRFVDDGD VRDSENGIPF LSWRLNVTDR  240
TSLVHDFTR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016200648.10.0PREDICTED: GATA transcription factor 18
SwissprotQ8LC792e-63GAT18_ARATH; GATA transcription factor 18
TrEMBLK7LNF51e-113K7LNF5_SOYBN; Uncharacterized protein
STRINGGLYMA11G07350.21e-113(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.15e-59GATA family protein